PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003681
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family BBR-BPC
Protein Properties Length: 314aa    MW: 35058.4 Da    PI: 9.9602
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58693432PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-32551PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind328.91.4e-10013141301
  GAGA_bind   1 mdddgsre..rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkl 81 
                mdd g+re   ++  yy+                ++++l   ++ ++m +++erd++i+er+ alsekk+a+ erdma +qrd+a+a+rn+a+ erdn++
  Lsa003681   1 MDDGGHREkgGHRVdYYKgvhpqwnmmpqqyqvkDQNALL--MNRKIMHIVSERDTAIEERDRALSEKKSALEERDMAIQQRDAAIADRNDAIRERDNAI 98 
                8888888866455558889999999998655443223444..899******************************************************* PP

  GAGA_bind  82 lalllvenslasalpvgvqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179
                +al ++e++++++l   +++++ t +++++   s   ++ +++ +e+    ++ ++ +  + +++ke+k+  ++ ++     ++ kk+kk +e+ +++v+
  Lsa003681  99 AALRFQETTMNNHL---QRASKRTATTHHHPPPSSyrHDQNPNITEAFPITIVPSEATAAKSKSVKERKSGGNGGSGGGGGGSRLKKQKKVGEDLNRNVT 195
                *********99888...45555555555555423211222333333344444444444444555555555555666666777788888888888888887 PP

  GAGA_bind 180 kesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGyd 278
                +++    skae++ ++l  ++++++Dest+P+P+CsCtG+ rqCYkWG+GGWqS+CCtttiSvyPLP+++++r++R++grKmS+ +f++lL++Laa+G+d
  Lsa003681 196 TDG----SKAEWDAQELgLMDQINFDESTMPIPICSCTGVGRQCYKWGSGGWQSSCCTTTISVYPLPQMPNKRHSRMGGRKMSGTVFTRLLSRLAAQGHD 291
                777....89********4469******************************************************************************* PP

  GAGA_bind 279 lsnpvDLkdhWAkHGtnkfvtir 301
                ls pvDLk++WAkHGtn+++ti+
  Lsa003681 292 LSAPVDLKNYWAKHGTNRYITIK 314
                **********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.4E-941314IPR010409GAGA-binding transcriptional activator
SMARTSM012263.3E-1301314IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDDGGHREKG GHRVDYYKGV HPQWNMMPQQ YQVKDQNALL MNRKIMHIVS ERDTAIEERD  60
RALSEKKSAL EERDMAIQQR DAAIADRNDA IRERDNAIAA LRFQETTMNN HLQRASKRTA  120
TTHHHPPPSS YRHDQNPNIT EAFPITIVPS EATAAKSKSV KERKSGGNGG SGGGGGGSRL  180
KKQKKVGEDL NRNVTTDGSK AEWDAQELGL MDQINFDEST MPIPICSCTG VGRQCYKWGS  240
GGWQSSCCTT TISVYPLPQM PNKRHSRMGG RKMSGTVFTR LLSRLAAQGH DLSAPVDLKN  300
YWAKHGTNRY ITIK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804621.11e-136PREDICTED: protein BASIC PENTACYSTEINE4-like
RefseqXP_009804622.11e-136PREDICTED: protein BASIC PENTACYSTEINE4-like
RefseqXP_016442557.11e-136PREDICTED: protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-115BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A103Y7V80.0A0A103Y7V8_CYNCS; GAGA binding-like protein
STRINGVIT_03s0038g00840.t011e-133(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-105basic pentacysteine 4